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Table 1 Sex-biased gene expression in wt and Kdm6a KO clones

From: Sex-biased and parental allele-specific gene regulation by KDM6A

 

wt

Male Kdm6aΔ/Y

  

Loss

Gain

BC

   

Female-biased genes

2048

708 (35%)

97 (5%)

Male-biased genes

868

214 (25%)

24 (3%)

Total

2916

922 (32%)

121 (4%)

CB

   

Female-biased genes

285

90 (32%)

 

Male-biased genes

323

77 (24%)

 

Total

608

167 (27%)

 
  1. Genes were determined to be sex-biased in wt cells based on a ≥ twofold TPM difference cut off. Wt lists the number of female- and male-biased genes in BC and CB clones. Loss and Gain indicate the number and percentage of female- and male-biased genes that were lost or gained in KO clones. For CB cells, changes in sex-biased genes were determined by comparing values from CB Kdm6a KO cells to wt values from published data following quantile normalization (see Methods) [34]. See also Fig. 2 and Additional file 3