Table 2 Autosomal gene duplication to MSY
Chromosome | Gene | SNVs | Average allele frequency | Strain w/o SNVs | Strain-specific SNVs | MSY SHR/Akr BAC | MSY gene | Duplication method | Tissue expression |
|---|---|---|---|---|---|---|---|---|---|
chr2 | Ect2 | 25 | 23.9 ± 2.3 | – | SBH(2), SR(2), SS(1) | AC241473.5 | Ect2Y_ps | Retroposed | None |
chr8 | Ube2q2 | 16 | 20.6 ± 2.1 | – | LL(2) | AC241873.4 | Ube2q2Y | Retroposed | Ubiquitous |
chr10 | Havcr2 | 33 | 30.8 ± 2.3 | – | – | AC241887.5 | Havcr2Y_ps | Retroposed | None |
chr10 | Limd2 | 40 | 45.2 ± 2.9 | – | LH(1), SBN(1) | AC241808.7 | Limd2Y_ps | Retroposed | None |
chr12 | RGD1560580 | 4 | 24.9 ± 4.5 | – | – | AC241548.6 | Ssty2 | MSY duplication | None |
chr13 | Xpr1 | 24 | 28.9 ± 2.1 | – | F344(2), SBN(1) | AC246656.3 | Xpr1_Y1/2/3/4 | Transposed | None |
chr13 | Prrc2c | 2 | 19.6 ± 1.8 | – | – | AC241950.2 | Prrc2cY_ps | Retroposed | None |
chr14 | Vom2r67 | 5 | 24.4 ± 2.7 | – | SBH(2), SR(1) | AC242505.8 | Vom2rY_ps | Retroposed | None |
chr16 | Lsm1 | 5 | 24.9 ± 2.2 | – | – | AC243283.4 | Lsm1Y_ps | Partial transposed | None |
chrX | Med14 | 33 | 31.2 ± 3.3 | FHL | FHH(1) | AC239701.6 | Med14y | Retroposed | Ubiquitous |